PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01290_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 198aa    MW: 21802.6 Da    PI: 6.2464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.3e-09110150954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  GSMUA_Achr5P01290_001 110 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 150
                            699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13106159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-14107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6111150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-6124155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDNTSNNSSS SWDLEMSMGN QFLSDHIPSE LFQPTDPFLA HVHSPTFPGT HMSAQREVEG  60
EEAEEEALGA MKEMMYRMAA MQPVDIDPST IKKPRRRNVR ISDDPQSVAA RHRRERISER  120
IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQVQELQPT PAQPQAAAPA AAAASSSSSS  180
SSAMAAPPAL GFGLEPMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-105BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-105EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399304.11e-130PREDICTED: transcription factor HEC3-like
SwissprotO813135e-47IND_ARATH; Transcription factor IND
TrEMBLM0SUQ81e-144M0SUQ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01290_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-32bHLH family protein